ICBP Summer Training Sessions

 

1st - August 29th and August 31st, 2006

2nd - October 10th and October 12th, 2006

 

Charlie Whittaker and Sebastian Hoersch

charliew@mit.edu

 

10-10-06-Introduction to Genome Sequence Analysis

 

Lecture Notes:

Session Presentation

OpenHelix UCSC Training Material

 

Problem Sets:

Genome Session Exercises and Problems

 

Useful Links:

OpenHelix

UCSC Genome Informatics

Ensembl

The Broad Institute

DOE Joint Genome Institute (JGI)

NCBI Entrez

 

 

10-12-06-Introduction to Protein Sequence Analysis

 

Lecture Notes:

Protein Session Presentation

 

Problem Sets:

Protein Session Demonstration and Exercises

 

Useful Links:

            Protein Databases

                        NCBI Protein

                        UniProt

                        IPI

Protein Domain/Motif Analysis

SMART

Interpro

Scansite

            Multiple Sequence Alignment and Phylogenetic Analysis

                        ClustalX for Windows

ClustalX for Mac

                        Version 1.83.1 - May be unstable

Version 1.82

                        Web-Based Clustalw

                        NJ Plot