ICBP Summer Training Sessions

1^st - August 29^th and August 31^st, 2006

2^nd - October 10^th and October 12^th, 2006

Charlie Whittaker and Sebastian Hoersch

charliew@mit.edu

10-10-06-Introduction to Genome Sequence Analysis

Lecture Notes:

Session Presentation

OpenHelix UCSC Training Material

Problem Sets:

Genome Session Exercises and Problems

Useful Links:

OpenHelix

UCSC Genome Informatics

Ensembl

The Broad Institute

DOE Joint Genome Institute (JGI)

NCBI Entrez

10-12-06-Introduction to Protein Sequence Analysis

Lecture Notes:

Protein Session Presentation

Problem Sets:

Protein Session Demonstration and Exercises

Useful Links:

Protein Databases

NCBI Protein

UniProt

IPI

Protein Domain/Motif Analysis

SMART

Interpro

Scansite

Multiple Sequence Alignment and Phylogenetic Analysis

ClustalX for Windows

ClustalX for Mac

Version 1.83.1 - May be unstable

Version 1.82

Web-Based Clustalw

NJ Plot